The EBI RDF Platform aims to bring together the efforts of a number of EMBL-EBI resources that provide access to their data using Semantic Web technologies.
The Universal Protein Resource (UniProt)
High-quality and freely accessible resource of protein sequence and functional information.
Bgee is a database to retrieve and compare gene expression patterns in multiple animal species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data). RDF data virtually generated by using an ontology based access approach (OBDA) over the Bgee relational database management system.
OMA database orth:Gene instances with the prefix http://omabrowser.org/ontology/oma# are reused in the Bgee RDF store to avoid additional and unnecessary owl:sameAs statements.
Instances that are exlusively stated in the Bgee RDF store with the prefix https://bgee.org/# .
Marc Robinson-Rechavi & Frédéric Bastian's group
A virtual link set between Ensembl gene cross-references in the UniProt and Bgee databases
?up_resource up:transcribedFrom ?ensemblGeneIRI . BIND(STRBEFORE(STRAFTER(str(?ensemblGeneIRI),"ensembl/"),".") as ?bgee_ensemblGeneID)