RNA-seq of Wistar-rat liver from young and old animals

Experiment ID:SRP106852
Technology:RNA-Seq
Description:Comparison of gene expression level by Illumina sequencing of rat liver from young and old animals. We identified differentially expressed genes and provide functional profiles, which give insights into the aging process of short-lived rodents. Overall design: 9 liver samples, 4-5 animals per group, 2 groups: 1) young males, 2) old males
Source:SRP106852  SRA
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Bulk RNA-Seq processed expression values in Rattus norvegicus

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Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
SRX2793930UBERON:0002107 liverliverRnorDv:0000022 6-month-old stage (rat)6 monthsmaleWistarNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH51single3475234227992145001632619527Browse results
SRX2793931UBERON:0002107 liverliverRnorDv:0000022 6-month-old stage (rat)6 monthsmaleWistarNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH51single3451170628415521001637119556.5Browse results
SRX2793932UBERON:0002107 liverliverRnorDv:0000022 6-month-old stage (rat)6 monthsmaleWistarNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH51single2715571322430959001628619517.5Browse results
SRX2793933UBERON:0002107 liverliverRnorDv:0000022 6-month-old stage (rat)6 monthsmaleWistarNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH51single2657113322004709001599819321.5Browse results
SRX2793934UBERON:0002107 liverliverRnorDv:0000022 6-month-old stage (rat)6 monthsmaleWistarNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH51single2676508821602190001590819295.5Browse results
SRX2793935UBERON:0002107 liverliverRnorDv:0000041 24-month-old stage (rat)24 monthsmaleWistarNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH51single3124789125182846001604719369Browse results
SRX2793936UBERON:0002107 liverliverRnorDv:0000041 24-month-old stage (rat)24 monthsmaleWistarNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH51single2528291120956444001610419409.5Browse results
SRX2793937UBERON:0002107 liverliverRnorDv:0000041 24-month-old stage (rat)24 monthsmaleWistarNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH51single3051346925584844001651819617.5Browse results
SRX2793938UBERON:0002107 liverliverRnorDv:0000041 24-month-old stage (rat)24 monthsmaleWistarNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH51single3271665327087243001636319551.5Browse results

Showing 1 to 9 of 9 entries