Search Genes

Gene : pafah1b1 - 399199 - Xenopus laevis (African clawed frog)

General information

Expressed in testis and 19 other cell types or tissues.

Gene identifier

399199

Name

pafah1b1

Description

Lissencephaly-1 homolog

Organism

Xenopus laevis (African clawed frog)

Synonym(s)

pafah1b1-b,mdcr,lis1,pafah,mds,lis2

Orthologs

52 orthologs

Paralogs

23 paralogs

Source data

Retrieve all processed expression values for that gene

Expression graph

80%

Expression table

80%

Reported absence of expression

80%

Orthologs

Filter:

Taxon Name	Species with orthologs	Gene(s)	Expression comparison
Xenopus	1 species Xenopus tropicalis (western clawed frog)	1 gene ENSXETG00000019410 pafah1b1	Compare expression
Tetrapoda	29 species Homo sapiens (human) Mus musculus (mouse) Canis lupus familiaris (dog) Felis catus (cat) Equus caballus (horse) Sus scrofa (pig) Bos taurus (cattle) Capra hircus (Goat) Ovis aries (Sheep) Oryctolagus cuniculus (rabbit) Cavia porcellus (guinea pig) Gallus gallus (chicken) Meleagris gallopavo (Wild turkey) Ornithorhynchus anatinus (platypus) Callithrix jacchus (White-tufted-ear marmoset) Cercocebus atys (Sooty mangabey) Macaca fascicularis (Crab-eating macaque) Macaca mulatta (macaque) Macaca nemestrina (Pig-tailed macaque) Papio anubis (Olive baboon) Gorilla gorilla (gorilla) Pan paniscus (bonobo) Pan troglodytes (chimpanzee) Chlorocebus sabaeus (Green monkey) Manis javanica (Malayan pangolin) Rattus norvegicus (rat) Monodelphis domestica (opossum) Xenopus tropicalis (western clawed frog) Anolis carolinensis (green anole)	29 genes ENSG00000007168 PAFAH1B1 ENSMUSG00000020745 Pafah1b1 ENSCAFG00000019298 PAFAH1B1 ENSFCAG00000023725 PAFAH1B1 ENSECAG00000014291 PAFAH1B1 ENSSSCG00000017836 PAFAH1B1 ENSBTAG00000016806 PAFAH1B1 ENSCHIG00000024168 PAFAH1B1 ENSOARG00000016011 PAFAH1B1 ENSOCUG00000000200 RAP1GAP2 ENSCPOG00000014648 PAFAH1B1 ENSGALG00000005834 PAFAH1B1 ENSMGAG00000008599 PAFAH1B1 ENSOANG00000015076 PAFAH1B1 ENSCJAG00000012325 PAFAH1B1 ENSCATG00000044340 PAFAH1B1 ENSMFAG00000025892 PAFAH1B1 ENSMMUG00000020524 PAFAH1B1 ENSMNEG00000041880 PAFAH1B1 ENSPANG00000024454 PAFAH1B1 ENSGGOG00000005305 PAFAH1B1 ENSPPAG00000028431 PAFAH1B1 ENSPTRG00000008551 PAFAH1B1 ENSCSAG00000013754 PAFAH1B1 108395035 PAFAH1B1 ENSRNOG00000002755 Pafah1b1 ENSMODG00000010776 PAFAH1B1 ENSXETG00000019410 pafah1b1 ENSACAG00000006706 PAFAH1B1	Compare expression
Sarcopterygii	30 species Homo sapiens (human) Mus musculus (mouse) Canis lupus familiaris (dog) Felis catus (cat) Equus caballus (horse) Sus scrofa (pig) Bos taurus (cattle) Capra hircus (Goat) Ovis aries (Sheep) Oryctolagus cuniculus (rabbit) Cavia porcellus (guinea pig) Gallus gallus (chicken) Meleagris gallopavo (Wild turkey) Ornithorhynchus anatinus (platypus) Callithrix jacchus (White-tufted-ear marmoset) Cercocebus atys (Sooty mangabey) Macaca fascicularis (Crab-eating macaque) Macaca mulatta (macaque) Macaca nemestrina (Pig-tailed macaque) Papio anubis (Olive baboon) Gorilla gorilla (gorilla) Pan paniscus (bonobo) Pan troglodytes (chimpanzee) Chlorocebus sabaeus (Green monkey) Manis javanica (Malayan pangolin) Rattus norvegicus (rat) Monodelphis domestica (opossum) Xenopus tropicalis (western clawed frog) Anolis carolinensis (green anole) Latimeria chalumnae (Coelacanth)	30 genes ENSG00000007168 PAFAH1B1 ENSMUSG00000020745 Pafah1b1 ENSCAFG00000019298 PAFAH1B1 ENSFCAG00000023725 PAFAH1B1 ENSECAG00000014291 PAFAH1B1 ENSSSCG00000017836 PAFAH1B1 ENSBTAG00000016806 PAFAH1B1 ENSCHIG00000024168 PAFAH1B1 ENSOARG00000016011 PAFAH1B1 ENSOCUG00000000200 RAP1GAP2 ENSCPOG00000014648 PAFAH1B1 ENSGALG00000005834 PAFAH1B1 ENSMGAG00000008599 PAFAH1B1 ENSOANG00000015076 PAFAH1B1 ENSCJAG00000012325 PAFAH1B1 ENSCATG00000044340 PAFAH1B1 ENSMFAG00000025892 PAFAH1B1 ENSMMUG00000020524 PAFAH1B1 ENSMNEG00000041880 PAFAH1B1 ENSPANG00000024454 PAFAH1B1 ENSGGOG00000005305 PAFAH1B1 ENSPPAG00000028431 PAFAH1B1 ENSPTRG00000008551 PAFAH1B1 ENSCSAG00000013754 PAFAH1B1 108395035 PAFAH1B1 ENSRNOG00000002755 Pafah1b1 ENSMODG00000010776 PAFAH1B1 ENSXETG00000019410 pafah1b1 ENSACAG00000006706 PAFAH1B1 ENSLACG00000018191 PAFAH1B1	Compare expression
Euteleostomi	43 species Homo sapiens (human) Mus musculus (mouse) Danio rerio (zebrafish) Canis lupus familiaris (dog) Felis catus (cat) Equus caballus (horse) Sus scrofa (pig) Bos taurus (cattle) Capra hircus (Goat) Ovis aries (Sheep) Oryctolagus cuniculus (rabbit) Cavia porcellus (guinea pig) Gallus gallus (chicken) Meleagris gallopavo (Wild turkey) Ornithorhynchus anatinus (platypus) Callithrix jacchus (White-tufted-ear marmoset) Cercocebus atys (Sooty mangabey) Macaca fascicularis (Crab-eating macaque) Macaca mulatta (macaque) Macaca nemestrina (Pig-tailed macaque) Papio anubis (Olive baboon) Gorilla gorilla (gorilla) Pan paniscus (bonobo) Pan troglodytes (chimpanzee) Chlorocebus sabaeus (Green monkey) Manis javanica (Malayan pangolin) Rattus norvegicus (rat) Monodelphis domestica (opossum) Xenopus tropicalis (western clawed frog) Anolis carolinensis (green anole) Lepisosteus oculatus (Spotted gar) Anguilla anguilla (European freshwater eel) Astyanax mexicanus (Blind cave fish) Esox lucius (Northern pike) Salmo salar (Atlantic salmon) Poecilia reticulata (Guppy) Oryzias latipes (Japanese rice fish) Astatotilapia calliptera (Eastern happy) Neolamprologus brichardi (Fairy cichlid) Scophthalmus maximus (Turbot) Gasterosteus aculeatus (Three-spined stickleback) Nothobranchius furzeri (Turquoise killifish) Latimeria chalumnae (Coelacanth)	47 genes ENSG00000007168 PAFAH1B1 ENSMUSG00000020745 Pafah1b1 ENSDARG00000026595 pafah1b1b ENSDARG00000032013 pafah1b1a ENSCAFG00000019298 PAFAH1B1 ENSFCAG00000023725 PAFAH1B1 ENSECAG00000014291 PAFAH1B1 ENSSSCG00000017836 PAFAH1B1 ENSBTAG00000016806 PAFAH1B1 ENSCHIG00000024168 PAFAH1B1 ENSOARG00000016011 PAFAH1B1 ENSOCUG00000000200 RAP1GAP2 ENSCPOG00000014648 PAFAH1B1 ENSGALG00000005834 PAFAH1B1 ENSMGAG00000008599 PAFAH1B1 ENSOANG00000015076 PAFAH1B1 ENSCJAG00000012325 PAFAH1B1 ENSCATG00000044340 PAFAH1B1 ENSMFAG00000025892 PAFAH1B1 ENSMMUG00000020524 PAFAH1B1 ENSMNEG00000041880 PAFAH1B1 ENSPANG00000024454 PAFAH1B1 ENSGGOG00000005305 PAFAH1B1 ENSPPAG00000028431 PAFAH1B1 ENSPTRG00000008551 PAFAH1B1 ENSCSAG00000013754 PAFAH1B1 108395035 PAFAH1B1 ENSRNOG00000002755 Pafah1b1 ENSMODG00000010776 PAFAH1B1 ENSXETG00000019410 pafah1b1 ENSACAG00000006706 PAFAH1B1 ENSLOCG00000004448 pafah1b1b 118209741 pafah1b1a 118235554 LOC118235554 ENSAMXG00000008734 pafah1b1a ENSAMXG00000020039 pafah1b1b ENSELUG00000007899 PAFAH1B1 ENSSSAG00000069688 LOC106581047 ENSSSAG00000075012 lis1a ENSPREG00000022018 PAFAH1B1 ENSORLG00000007910 PAFAH1B1 ENSACLG00000020631 PAFAH1B1 ENSNBRG00000008778 PAFAH1B1 ENSSMAG00000017470 PAFAH1B1 ENSGACG00000008413 PAFAH1B1 ENSNFUG00015000485 PAFAH1B1A ENSLACG00000018191 PAFAH1B1	Compare expression
Chordata	44 species Homo sapiens (human) Mus musculus (mouse) Danio rerio (zebrafish) Canis lupus familiaris (dog) Felis catus (cat) Equus caballus (horse) Sus scrofa (pig) Bos taurus (cattle) Capra hircus (Goat) Ovis aries (Sheep) Oryctolagus cuniculus (rabbit) Cavia porcellus (guinea pig) Gallus gallus (chicken) Meleagris gallopavo (Wild turkey) Ornithorhynchus anatinus (platypus) Callithrix jacchus (White-tufted-ear marmoset) Cercocebus atys (Sooty mangabey) Macaca fascicularis (Crab-eating macaque) Macaca mulatta (macaque) Macaca nemestrina (Pig-tailed macaque) Papio anubis (Olive baboon) Gorilla gorilla (gorilla) Pan paniscus (bonobo) Pan troglodytes (chimpanzee) Chlorocebus sabaeus (Green monkey) Manis javanica (Malayan pangolin) Rattus norvegicus (rat) Monodelphis domestica (opossum) Xenopus tropicalis (western clawed frog) Anolis carolinensis (green anole) Lepisosteus oculatus (Spotted gar) Anguilla anguilla (European freshwater eel) Astyanax mexicanus (Blind cave fish) Esox lucius (Northern pike) Salmo salar (Atlantic salmon) Poecilia reticulata (Guppy) Oryzias latipes (Japanese rice fish) Astatotilapia calliptera (Eastern happy) Neolamprologus brichardi (Fairy cichlid) Scophthalmus maximus (Turbot) Gasterosteus aculeatus (Three-spined stickleback) Nothobranchius furzeri (Turquoise killifish) Branchiostoma lanceolatum (Common lancelet) Latimeria chalumnae (Coelacanth)	48 genes ENSG00000007168 PAFAH1B1 ENSMUSG00000020745 Pafah1b1 ENSDARG00000026595 pafah1b1b ENSDARG00000032013 pafah1b1a ENSCAFG00000019298 PAFAH1B1 ENSFCAG00000023725 PAFAH1B1 ENSECAG00000014291 PAFAH1B1 ENSSSCG00000017836 PAFAH1B1 ENSBTAG00000016806 PAFAH1B1 ENSCHIG00000024168 PAFAH1B1 ENSOARG00000016011 PAFAH1B1 ENSOCUG00000000200 RAP1GAP2 ENSCPOG00000014648 PAFAH1B1 ENSGALG00000005834 PAFAH1B1 ENSMGAG00000008599 PAFAH1B1 ENSOANG00000015076 PAFAH1B1 ENSCJAG00000012325 PAFAH1B1 ENSCATG00000044340 PAFAH1B1 ENSMFAG00000025892 PAFAH1B1 ENSMMUG00000020524 PAFAH1B1 ENSMNEG00000041880 PAFAH1B1 ENSPANG00000024454 PAFAH1B1 ENSGGOG00000005305 PAFAH1B1 ENSPPAG00000028431 PAFAH1B1 ENSPTRG00000008551 PAFAH1B1 ENSCSAG00000013754 PAFAH1B1 108395035 PAFAH1B1 ENSRNOG00000002755 Pafah1b1 ENSMODG00000010776 PAFAH1B1 ENSXETG00000019410 pafah1b1 ENSACAG00000006706 PAFAH1B1 ENSLOCG00000004448 pafah1b1b 118209741 pafah1b1a 118235554 LOC118235554 ENSAMXG00000008734 pafah1b1a ENSAMXG00000020039 pafah1b1b ENSELUG00000007899 PAFAH1B1 ENSSSAG00000069688 LOC106581047 ENSSSAG00000075012 lis1a ENSPREG00000022018 PAFAH1B1 ENSORLG00000007910 PAFAH1B1 ENSACLG00000020631 PAFAH1B1 ENSNBRG00000008778 PAFAH1B1 ENSSMAG00000017470 PAFAH1B1 ENSGACG00000008413 PAFAH1B1 ENSNFUG00015000485 PAFAH1B1A BL16119 PAFAH1B1 ENSLACG00000018191 PAFAH1B1	Compare expression
Bilateria	48 species Homo sapiens (human) Mus musculus (mouse) Danio rerio (zebrafish) Drosophila melanogaster (fruit fly) Caenorhabditis elegans (nematode) Canis lupus familiaris (dog) Felis catus (cat) Equus caballus (horse) Sus scrofa (pig) Bos taurus (cattle) Capra hircus (Goat) Ovis aries (Sheep) Oryctolagus cuniculus (rabbit) Cavia porcellus (guinea pig) Gallus gallus (chicken) Meleagris gallopavo (Wild turkey) Ornithorhynchus anatinus (platypus) Callithrix jacchus (White-tufted-ear marmoset) Cercocebus atys (Sooty mangabey) Macaca fascicularis (Crab-eating macaque) Macaca mulatta (macaque) Macaca nemestrina (Pig-tailed macaque) Papio anubis (Olive baboon) Gorilla gorilla (gorilla) Pan paniscus (bonobo) Pan troglodytes (chimpanzee) Chlorocebus sabaeus (Green monkey) Manis javanica (Malayan pangolin) Rattus norvegicus (rat) Monodelphis domestica (opossum) Xenopus tropicalis (western clawed frog) Anolis carolinensis (green anole) Lepisosteus oculatus (Spotted gar) Anguilla anguilla (European freshwater eel) Astyanax mexicanus (Blind cave fish) Esox lucius (Northern pike) Salmo salar (Atlantic salmon) Poecilia reticulata (Guppy) Oryzias latipes (Japanese rice fish) Astatotilapia calliptera (Eastern happy) Neolamprologus brichardi (Fairy cichlid) Scophthalmus maximus (Turbot) Gasterosteus aculeatus (Three-spined stickleback) Nothobranchius furzeri (Turquoise killifish) Branchiostoma lanceolatum (Common lancelet) Latimeria chalumnae (Coelacanth) Drosophila pseudoobscura () Drosophila simulans ()	52 genes ENSG00000007168 PAFAH1B1 ENSMUSG00000020745 Pafah1b1 ENSDARG00000026595 pafah1b1b ENSDARG00000032013 pafah1b1a FBgn0015754 Lis-1 WBGene00003047 lis-1 ENSCAFG00000019298 PAFAH1B1 ENSFCAG00000023725 PAFAH1B1 ENSECAG00000014291 PAFAH1B1 ENSSSCG00000017836 PAFAH1B1 ENSBTAG00000016806 PAFAH1B1 ENSCHIG00000024168 PAFAH1B1 ENSOARG00000016011 PAFAH1B1 ENSOCUG00000000200 RAP1GAP2 ENSCPOG00000014648 PAFAH1B1 ENSGALG00000005834 PAFAH1B1 ENSMGAG00000008599 PAFAH1B1 ENSOANG00000015076 PAFAH1B1 ENSCJAG00000012325 PAFAH1B1 ENSCATG00000044340 PAFAH1B1 ENSMFAG00000025892 PAFAH1B1 ENSMMUG00000020524 PAFAH1B1 ENSMNEG00000041880 PAFAH1B1 ENSPANG00000024454 PAFAH1B1 ENSGGOG00000005305 PAFAH1B1 ENSPPAG00000028431 PAFAH1B1 ENSPTRG00000008551 PAFAH1B1 ENSCSAG00000013754 PAFAH1B1 108395035 PAFAH1B1 ENSRNOG00000002755 Pafah1b1 ENSMODG00000010776 PAFAH1B1 ENSXETG00000019410 pafah1b1 ENSACAG00000006706 PAFAH1B1 ENSLOCG00000004448 pafah1b1b 118209741 pafah1b1a 118235554 LOC118235554 ENSAMXG00000008734 pafah1b1a ENSAMXG00000020039 pafah1b1b ENSELUG00000007899 PAFAH1B1 ENSSSAG00000069688 LOC106581047 ENSSSAG00000075012 lis1a ENSPREG00000022018 PAFAH1B1 ENSORLG00000007910 PAFAH1B1 ENSACLG00000020631 PAFAH1B1 ENSNBRG00000008778 PAFAH1B1 ENSSMAG00000017470 PAFAH1B1 ENSGACG00000008413 PAFAH1B1 ENSNFUG00015000485 PAFAH1B1A BL16119 PAFAH1B1 ENSLACG00000018191 PAFAH1B1 FBgn0081067 Dpse\GA21079 FBgn0182923 Dsim\GD11168	Compare expression

Showing 1 to 6 of 6 entries

Paralogs (same species)

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Taxon Name	Gene(s)	Expression comparison	See details
Opisthokonta	23 genes 100049143 atg16l1.S 100137676 rrp9.S 108695415 dcaf13.S 108696545 gnb1.L 108698125 wdr31.L 108706653 plrg1.S 108714613 LOC108714613 108716833 cdc40.L 108719835 wdr37.S 379734 tbl3.L 380144 gnb3.L 380321 dcaf13 380378 gnb3.S 398895 mlst8 399330 gnb1.S 444570 gnb4.L 446730 wdr37 447521 cdc40.S 495335 gnb4.S 495399 plrg1.L 495838 atg16l1.L 734280 daw1 734637 pwp2.S	Compare expression: table \| graph

Showing 1 to 1 of 1 entries

Cross-references

RefSeq

NM_001090465.1,NP_001083934.1,pafah1b1 (pafah1b1)

Xenbase

XB-GENE-1002849,XB-GENE-17330834

EMBL

AAH77270.1,AAK52334.1,AY032881,BC077270

UniProtKB/Swiss-Prot

LIS1_XENLA,Q90ZL4