Mouse embryonic RNA-seq

Experiment ID:ERP013381
Technology:scRNA-Seq
Description:The study was aimed at interrogating the early stages of blood cell development within the embryo. Blood develops from mesoderm, which is specified at gastrulation. We therefore sorted cells from mouse embryos between E6.5 and E7.75 to capture gastrulation and the emergence of mesoderm, followed by specificiation of the first mature blood cells.
Cell count:1,205
DOI:10.1038/nature18633
Source:ERP013381  SRA
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scRNA-Seq full-length processed expression values per cell population in Mus musculusscRNA-Seq full-length H5AD data per cell in Mus musculus

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Library ID
Identifier of the RNA-Seq library
Cell type ID
ID of the cell type of the sample
Cell type name
Name of the cell type of the sample
Cell type author annotation
Free text annotation of cell type as provided by authors
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fractionation
Possible values are: cell, transcripts are extracted from the cell; nuclei, transcripts are extracted from the nucleus.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
ERX1226326CL:0000222 mesodermal cellembryonic cell CD41-positive, Flk1-negativeUBERON:0000922 embryowhole organismMmusDv:0000094 Theiler stage 11c (mouse)embryonic day 7.75 head fold (HF)NACD-1NANAMus musculusNASmart-seq2Illumina HiSeq 2500FULL_LENGTHCELL125single1097561853138001043810462Browse results
ERX1226327CL:0000222 mesodermal cellembryonic cell CD41-positive, Flk1-negativeUBERON:0000922 embryowhole organismMmusDv:0000094 Theiler stage 11c (mouse)embryonic day 7.75 head fold (HF)NACD-1NANAMus musculusNASmart-seq2Illumina HiSeq 2500FULL_LENGTHCELL125single10259298307750060656079Browse results
ERX1226328CL:0000222 mesodermal cellembryonic cell CD41-positive, Flk1-negativeUBERON:0000922 embryowhole organismMmusDv:0000094 Theiler stage 11c (mouse)embryonic day 7.75 head fold (HF)NACD-1NANAMus musculusNASmart-seq2Illumina HiSeq 2500FULL_LENGTHCELL125single177530513907880099269950Browse results
ERX1226329CL:0000222 mesodermal cellembryonic cell CD41-positive, Flk1-negativeUBERON:0000922 embryowhole organismMmusDv:0000094 Theiler stage 11c (mouse)embryonic day 7.75 head fold (HF)NACD-1NANAMus musculusNASmart-seq2Illumina HiSeq 2500FULL_LENGTHCELL125single13963501163465001020810233Browse results
ERX1226330CL:0000222 mesodermal cellembryonic cell CD41-positive, Flk1-negativeUBERON:0000922 embryowhole organismMmusDv:0000094 Theiler stage 11c (mouse)embryonic day 7.75 head fold (HF)NACD-1NANAMus musculusNASmart-seq2Illumina HiSeq 2500FULL_LENGTHCELL125single208747017693170094499484.5Browse results
ERX1226331CL:0000222 mesodermal cellembryonic cell CD41-positive, Flk1-negativeUBERON:0000922 embryowhole organismMmusDv:0000094 Theiler stage 11c (mouse)embryonic day 7.75 head fold (HF)NACD-1NANAMus musculusNASmart-seq2Illumina HiSeq 2500FULL_LENGTHCELL125single1892358145841500998510019.5Browse results
ERX1226332CL:0000222 mesodermal cellembryonic cell CD41-positive, Flk1-negativeUBERON:0000922 embryowhole organismMmusDv:0000094 Theiler stage 11c (mouse)embryonic day 7.75 head fold (HF)NACD-1NANAMus musculusNASmart-seq2Illumina HiSeq 2500FULL_LENGTHCELL125single10827239339850088518876.5Browse results
ERX1226333CL:0000222 mesodermal cellembryonic cell CD41-positive, Flk1-negativeUBERON:0000922 embryowhole organismMmusDv:0000094 Theiler stage 11c (mouse)embryonic day 7.75 head fold (HF)NACD-1NANAMus musculusNASmart-seq2Illumina HiSeq 2500FULL_LENGTHCELL125single7433336169960093279345.5Browse results
ERX1226334CL:0000222 mesodermal cellembryonic cell CD41-positive, Flk1-negativeUBERON:0000922 embryowhole organismMmusDv:0000094 Theiler stage 11c (mouse)embryonic day 7.75 head fold (HF)NACD-1NANAMus musculusNASmart-seq2Illumina HiSeq 2500FULL_LENGTHCELL125single7310576391580085858603Browse results
ERX1226335CL:0000222 mesodermal cellembryonic cell CD41-positive, Flk1-negativeUBERON:0000922 embryowhole organismMmusDv:0000094 Theiler stage 11c (mouse)embryonic day 7.75 head fold (HF)NACD-1NANAMus musculusNASmart-seq2Illumina HiSeq 2500FULL_LENGTHCELL125single253598321581960096789701Browse results
ERX1226336CL:0000222 mesodermal cellembryonic cell CD41-positive, Flk1-negativeUBERON:0000922 embryowhole organismMmusDv:0000094 Theiler stage 11c (mouse)embryonic day 7.75 head fold (HF)NACD-1NANAMus musculusNASmart-seq2Illumina HiSeq 2500FULL_LENGTHCELL125single186525614650500074167443.5Browse results
ERX1226337CL:0000222 mesodermal cellembryonic cell CD41-positive, Flk1-negativeUBERON:0000922 embryowhole organismMmusDv:0000094 Theiler stage 11c (mouse)embryonic day 7.75 head fold (HF)NACD-1NANAMus musculusNASmart-seq2Illumina HiSeq 2500FULL_LENGTHCELL125single22664341853640001004310081.5Browse results
ERX1226338CL:0000222 mesodermal cellembryonic cell CD41-positive, Flk1-negativeUBERON:0000922 embryowhole organismMmusDv:0000094 Theiler stage 11c (mouse)embryonic day 7.75 head fold (HF)NACD-1NANAMus musculusNASmart-seq2Illumina HiSeq 2500FULL_LENGTHCELL125single32726132813535001005510094.5Browse results
ERX1226339CL:0000222 mesodermal cellembryonic cell CD41-positive, Flk1-negativeUBERON:0000922 embryowhole organismUBERON:0000110 neurula stageembryonic day 7.5NACD-1NANAMus musculusNASmart-seq2Illumina HiSeq 2500FULL_LENGTHCELL125single24984742128531001107711104Browse results
ERX1226340CL:0000222 mesodermal cellembryonic cell CD41-positive, Flk1-negativeUBERON:0000922 embryowhole organismUBERON:0000110 neurula stageembryonic day 7.5NACD-1NANAMus musculusNASmart-seq2Illumina HiSeq 2500FULL_LENGTHCELL125single17743591512722001008910115.5Browse results
ERX1226341CL:0000222 mesodermal cellembryonic cell CD41-positive, Flk1-negativeUBERON:0000922 embryowhole organismMmusDv:0000094 Theiler stage 11c (mouse)embryonic day 7.75 head fold (HF)NACD-1NANAMus musculusNASmart-seq2Illumina HiSeq 2500FULL_LENGTHCELL125single11391179803390093029319Browse results
ERX1226342CL:0000222 mesodermal cellembryonic cell CD41-positive, Flk1-negativeUBERON:0000922 embryowhole organismMmusDv:0000094 Theiler stage 11c (mouse)embryonic day 7.75 head fold (HF)NACD-1NANAMus musculusNASmart-seq2Illumina HiSeq 2500FULL_LENGTHCELL125single160722313420100098369874Browse results
ERX1226343CL:0000222 mesodermal cellembryonic cell CD41-positive, Flk1-negativeUBERON:0000922 embryowhole organismMmusDv:0000094 Theiler stage 11c (mouse)embryonic day 7.75 head fold (HF)NACD-1NANAMus musculusNASmart-seq2Illumina HiSeq 2500FULL_LENGTHCELL125single49469334280751001081010850.5Browse results
ERX1226344CL:0000222 mesodermal cellembryonic cell CD41-positive, Flk1-negativeUBERON:0000922 embryowhole organismMmusDv:0000094 Theiler stage 11c (mouse)embryonic day 7.75 head fold (HF)NACD-1NANAMus musculusNASmart-seq2Illumina HiSeq 2500FULL_LENGTHCELL125single57157445014881001045310476Browse results
ERX1226345CL:0000222 mesodermal cellembryonic cell CD41-positive, Flk1-negativeUBERON:0000922 embryowhole organismMmusDv:0000094 Theiler stage 11c (mouse)embryonic day 7.75 head fold (HF)NACD-1NANAMus musculusNASmart-seq2Illumina HiSeq 2500FULL_LENGTHCELL125single67657645844478001089610951.5Browse results

Showing 1 to 20 of 1205 entries