Rat RNA-seq time-series of the development of seven major organs

Experiment ID:ERP108920
Technology:RNA-Seq
Description:This dataset covers the development of 7 organs (brain, cerebellum, heart, kidney, liver, ovary and testis) from embryonic day 11 to adulthood.
Source:ERP108920  SRA
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Bulk RNA-Seq processed expression values in Rattus norvegicus

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Showing 1 to 20 of 350 entries

Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
ERX2608621UBERON:0000955 brainbrainRnorDv:0000008 tail bud embryo stage (rat)e11femaleHoltzman SDNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single2490424018538196001775921280Browse results
ERX2608622UBERON:0000948 heartheartRnorDv:0000008 tail bud embryo stage (rat)e11femaleHoltzman SDNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single5920432841621427001856521764Browse results
ERX2608623UBERON:0000955 brainbrainRnorDv:0000008 tail bud embryo stage (rat)e11femaleHoltzman SDNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single2619479719434549001790821383Browse results
ERX2608624UBERON:0000948 heartheartRnorDv:0000008 tail bud embryo stage (rat)e11femaleHoltzman SDNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single2970241721331325001777421328Browse results
ERX2608625UBERON:0000955 brainbrainRnorDv:0000008 tail bud embryo stage (rat)e11maleHoltzman SDNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single2744176720262810001800721468.5Browse results
ERX2608626UBERON:0000948 heartheartRnorDv:0000008 tail bud embryo stage (rat)e11maleHoltzman SDNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single3927696428067348001819221570.5Browse results
ERX2608627UBERON:0000955 brainbrainRnorDv:0000008 tail bud embryo stage (rat)e11maleHoltzman SDNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single4180997330869275001851621741Browse results
ERX2608628UBERON:0000948 heartheartRnorDv:0000008 tail bud embryo stage (rat)e11maleHoltzman SDNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single2346431916624344001768221275.5Browse results
ERX2608629UBERON:0000955 brainbrainRnorDv:0000008 tail bud embryo stage (rat)e12maleHoltzman SDNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single4495048633313510001841721637Browse results
ERX2608630UBERON:0000473 testistestisRnorDv:0000008 tail bud embryo stage (rat)e12maleHoltzman SDNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single5286762537250061001910422044Browse results
ERX2608631UBERON:0000955 brainbrainRnorDv:0000008 tail bud embryo stage (rat)e12maleHoltzman SDNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single4482073633906997001846921724Browse results
ERX2608632UBERON:0000473 testistestisRnorDv:0000008 tail bud embryo stage (rat)e12maleHoltzman SDNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single3148344522751016001826721572Browse results
ERX2608633UBERON:0002107 liverliverRnorDv:0000008 tail bud embryo stage (rat)e12maleHoltzman SDNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single3049991021998574001835221628.5Browse results
ERX2608634UBERON:0000948 heartheartRnorDv:0000008 tail bud embryo stage (rat)e12maleHoltzman SDNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single2574309518015003001785921373.5Browse results
ERX2608635UBERON:0002107 liverliverRnorDv:0000008 tail bud embryo stage (rat)e12maleHoltzman SDNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single3060757722148912001817921545Browse results
ERX2608636UBERON:0000948 heartheartRnorDv:0000008 tail bud embryo stage (rat)e12maleHoltzman SDNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single2180876216089710001734221075.5Browse results
ERX2608637UBERON:0000955 brainbrainRnorDv:0000008 tail bud embryo stage (rat)e12femaleHoltzman SDNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single2739376719796220001812421526Browse results
ERX2608638UBERON:0000992 ovaryovaryRnorDv:0000008 tail bud embryo stage (rat)e12femaleHoltzman SDNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single3579534524130122001868021809.5Browse results
ERX2608639UBERON:0000948 heartheartRnorDv:0000008 tail bud embryo stage (rat)e12femaleHoltzman SDNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single3372523823171396001813621527.5Browse results
ERX2608640UBERON:0002107 liverliverRnorDv:0000008 tail bud embryo stage (rat)e12femaleHoltzman SDNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single6048778641970512001925022155Browse results

Showing 1 to 20 of 350 entries