Human fetal liver, skin and kidney single cell transcriptome data

Experiment ID:ERP117745
Technology:scRNA-Seq
Description:This is a droplet-based single cell transcriptome data set from 13 human fetal livers (6-18 PCW) and 8 skin and kidney samples (6-12 PCW). It includes 199,642 cells with a mean detected gene number of 3000.
Cell count:135,153
DOI:10.1038/s41586-019-1652-y
Source:ERP117745  SRA
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scRNA-Seq droplet-based processed expression values per cell population in Homo sapiensscRNA-Seq droplet-based H5AD data per cell in Homo sapiens

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Library ID
Identifier of the RNA-Seq library
Cell type ID
ID of the cell type of the sample
Cell type name
Name of the cell type of the sample
Cell type author annotation
Free text annotation of cell type as provided by authors
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fractionation
Possible values are: cell, transcripts are extracted from the cell; nuclei, transcripts are extracted from the nucleus.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
ERX3581434CL:0000784 plasmacytoid dendritic cellDC2UBERON:0000081 metanephroskidneyHsapDv:0000046 9th week post-fertilization stage (human)embryo at 8 weeks gestationmaleNANANAHomo sapiensNA10X Genomics V2Illumina HiSeq 4000THREE_PRIMECELL0single784726887576251199018167678922174.5Browse results
ERX3581434CL:0001065 innate lymphoid cellILC precursorUBERON:0000081 metanephroskidneyHsapDv:0000046 9th week post-fertilization stage (human)embryo at 8 weeks gestationmaleNANANAHomo sapiensNA10X Genomics V2Illumina HiSeq 4000THREE_PRIMECELL0single784726887576251199010320049321391.5Browse results
ERX3581434CL:0000235 macrophageMacrophageUBERON:0000081 metanephroskidneyHsapDv:0000046 9th week post-fertilization stage (human)embryo at 8 weeks gestationmaleNANANAHomo sapiensNA10X Genomics V2Illumina HiSeq 4000THREE_PRIMECELL0single784726887576251199031298083723063.5Browse results
ERX3581434CL:0000556 megakaryocyteMegakaryocyteUBERON:0000081 metanephroskidneyHsapDv:0000046 9th week post-fertilization stage (human)embryo at 8 weeks gestationmaleNANANAHomo sapiensNA10X Genomics V2Illumina HiSeq 4000THREE_PRIMECELL0single7847268875762511990576442151923279.5Browse results
ERX3581434CL:0000050 megakaryocyte-erythroid progenitor cellMEMPUBERON:0000081 metanephroskidneyHsapDv:0000046 9th week post-fertilization stage (human)embryo at 8 weeks gestationmaleNANANAHomo sapiensNA10X Genomics V2Illumina HiSeq 4000THREE_PRIMECELL0single78472688757625119907591446720932Browse results
ERX3581434CL:0000576 monocyteMonocyteUBERON:0000081 metanephroskidneyHsapDv:0000046 9th week post-fertilization stage (human)embryo at 8 weeks gestationmaleNANANAHomo sapiensNA10X Genomics V2Illumina HiSeq 4000THREE_PRIMECELL0single78472688757625119904454027920032.5Browse results
ERX3581434CL:0000049 common myeloid progenitorNeut myeloidUBERON:0000081 metanephroskidneyHsapDv:0000046 9th week post-fertilization stage (human)embryo at 8 weeks gestationmaleNANANAHomo sapiensNA10X Genomics V2Illumina HiSeq 4000THREE_PRIMECELL0single78472688757625119903307221219743.5Browse results
ERX3581434CL:0000623 natural killer cellNKUBERON:0000081 metanephroskidneyHsapDv:0000046 9th week post-fertilization stage (human)embryo at 8 weeks gestationmaleNANANAHomo sapiensNA10X Genomics V2Illumina HiSeq 4000THREE_PRIMECELL0single784726887576251199022571671822439Browse results
ERX3581436CL:0000236 B cellB cellUBERON:0002107 liverliverHsapDv:0000046 9th week post-fertilization stage (human)embryo at 8 weeks gestationmaleNANANAHomo sapiensNA10X Genomics V2Illumina HiSeq 4000THREE_PRIMECELL0single74714344857362391401686716018967Browse results
ERX3581436CL:0000764 erythroid lineage cellLate ErythroidUBERON:0002107 liverliverHsapDv:0000046 9th week post-fertilization stage (human)embryo at 8 weeks gestationmaleNANANAHomo sapiensNA10X Genomics V2Illumina HiSeq 4000THREE_PRIMECELL0single74714344857362391402941511418839.5Browse results
ERX3581436CL:0000097 mast cellMast cellUBERON:0002107 liverliverHsapDv:0000046 9th week post-fertilization stage (human)embryo at 8 weeks gestationmaleNANANAHomo sapiensNA10X Genomics V2Illumina HiSeq 4000THREE_PRIMECELL0single747143448573623914069547418271Browse results
ERX3581436CL:0000764 erythroid lineage cellMid ErythroidUBERON:0002107 liverliverHsapDv:0000046 9th week post-fertilization stage (human)embryo at 8 weeks gestationmaleNANANAHomo sapiensNA10X Genomics V2Illumina HiSeq 4000THREE_PRIMECELL0single74714344857362391402227614419040Browse results
ERX3581436CL:0000113 mononuclear phagocyteMono-MacUBERON:0002107 liverliverHsapDv:0000046 9th week post-fertilization stage (human)embryo at 8 weeks gestationmaleNANANAHomo sapiensNA10X Genomics V2Illumina HiSeq 4000THREE_PRIMECELL0single747143448573623914015943267021833Browse results
ERX3581436CL:0000576 monocyteMonocyteUBERON:0002107 liverliverHsapDv:0000046 9th week post-fertilization stage (human)embryo at 8 weeks gestationmaleNANANAHomo sapiensNA10X Genomics V2Illumina HiSeq 4000THREE_PRIMECELL0single747143448573623914020715075721915.5Browse results
ERX3581436CL:0000623 natural killer cellNKUBERON:0002107 liverliverHsapDv:0000046 9th week post-fertilization stage (human)embryo at 8 weeks gestationmaleNANANAHomo sapiensNA10X Genomics V2Illumina HiSeq 4000THREE_PRIMECELL0single7471434485736239140715589174423757.5Browse results
ERX3581436CL:0001029 common dendritic progenitorDC precursorUBERON:0002107 liverliverHsapDv:0000046 9th week post-fertilization stage (human)embryo at 8 weeks gestationmaleNANANAHomo sapiensNA10X Genomics V2Illumina HiSeq 4000THREE_PRIMECELL0single74714344857362391404319535619911.5Browse results
ERX3581436CL:0000784 plasmacytoid dendritic cellDC2UBERON:0002107 liverliverHsapDv:0000046 9th week post-fertilization stage (human)embryo at 8 weeks gestationmaleNANANAHomo sapiensNA10X Genomics V2Illumina HiSeq 4000THREE_PRIMECELL0single7471434485736239140241317101922297Browse results
ERX3581436CL:0000827 pro-T cellEarly lymphoid_T lymphocyteUBERON:0002107 liverliverHsapDv:0000046 9th week post-fertilization stage (human)embryo at 8 weeks gestationmaleNANANAHomo sapiensNA10X Genomics V2Illumina HiSeq 4000THREE_PRIMECELL0single74714344857362391403174628519548.5Browse results
ERX3581436CL:0000115 endothelial cellEndothelial cellUBERON:0002107 liverliverHsapDv:0000046 9th week post-fertilization stage (human)embryo at 8 weeks gestationmaleNANANAHomo sapiensNA10X Genomics V2Illumina HiSeq 4000THREE_PRIMECELL0single747143448573623914049046618033.5Browse results
ERX3581436CL:0000057 fibroblastFibroblastUBERON:0002107 liverliverHsapDv:0000046 9th week post-fertilization stage (human)embryo at 8 weeks gestationmaleNANANAHomo sapiensNA10X Genomics V2Illumina HiSeq 4000THREE_PRIMECELL0single747143448573623914045006218135Browse results

Showing 1 to 20 of 1101 entries