Gene Expression Defines Natural Changes in Mammalian Lifespan

Experiment ID:GSE43013
Technology:RNA-Seq
Description:RNA-seq gene expression profiling in normal liver, kidney and brain of 33 mammalian species.
DOI:10.1111/acel.12283
Source:GSE43013  GEO
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Bulk RNA-Seq processed expression values in Oryctolagus cuniculusBulk RNA-Seq processed expression values in Rattus norvegicusBulk RNA-Seq processed expression values in Equus caballusBulk RNA-Seq processed expression values in Felis catusBulk RNA-Seq processed expression values in Capra hircusBulk RNA-Seq processed expression values in Bos taurusBulk RNA-Seq processed expression values in Mus musculusBulk RNA-Seq processed expression values in Cavia porcellusBulk RNA-Seq processed expression values in Canis lupus familiarisBulk RNA-Seq processed expression values in Sus scrofa

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Showing 1 to 20 of 74 entries

Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
SRX211579UBERON:0002107 liverwhole liverUBERON:0018241 prime adult stageadultmaleNANANABos taurusNAIlluminaIllumina Genome Analyzer IIxFULL_LENGTH51paired1615563613527706001645819916Browse results
SRX211580UBERON:0002107 liverwhole liverUBERON:0018241 prime adult stageadultmaleNANANABos taurusNAIlluminaIllumina Genome Analyzer IIxFULL_LENGTH51paired1514452011834839001690820219.5Browse results
SRX211582UBERON:0002107 liverwhole liverUBERON:0018241 prime adult stageadultmaleNANANACanis lupus familiarisNAIlluminaIllumina Genome Analyzer IIxFULL_LENGTH51paired1308916110008680001635619066Browse results
SRX211583UBERON:0002107 liverwhole liverUBERON:0018241 prime adult stageadultmaleNANANACanis lupus familiarisNAIlluminaIllumina Genome Analyzer IIxFULL_LENGTH51paired1695028913158035001662819252Browse results
SRX211584UBERON:0002107 liverwhole liverUBERON:0018241 prime adult stageadultmaleNANANACapra hircusNAIlluminaIllumina Genome Analyzer IIxFULL_LENGTH101paired1587386711674353001640418449.5Browse results
SRX211585UBERON:0002107 liverwhole liverUBERON:0018241 prime adult stageadultmaleNANANACapra hircusNAIlluminaIllumina Genome Analyzer IIxFULL_LENGTH101paired1645460610524490001702118848.5Browse results
SRX211586UBERON:0002107 liverwhole liverUBERON:0018241 prime adult stageadultmaleNANANACavia porcellusNAIlluminaIllumina Genome Analyzer IIxFULL_LENGTH51paired3015525223235645001648018054Browse results
SRX211587UBERON:0002107 liverwhole liverUBERON:0018241 prime adult stageadultmaleNANANACavia porcellusNAIlluminaIllumina Genome Analyzer IIxFULL_LENGTH51paired3231399925799059001641117975Browse results
SRX211588UBERON:0002107 liverwhole liverUBERON:0018241 prime adult stageadultmaleNANANACavia porcellusNAIlluminaIllumina Genome Analyzer IIxFULL_LENGTH51paired2360564218770418001619017769Browse results
SRX211589UBERON:0002107 liverwhole liverUBERON:0018241 prime adult stageadultNANANANAEquus caballusNAIlluminaIllumina Genome Analyzer IIxFULL_LENGTH51paired2397871218068833001733419909.5Browse results
SRX211590UBERON:0002107 liverwhole liverUBERON:0018241 prime adult stageadultNANANANAEquus caballusNAIlluminaIllumina Genome Analyzer IIxFULL_LENGTH51paired2523819918504700001758620076.5Browse results
SRX211591UBERON:0002107 liverwhole liverUBERON:0018241 prime adult stageadultNANANANAEquus caballusNAIlluminaIllumina Genome Analyzer IIxFULL_LENGTH51paired1346568510007174001691119660Browse results
SRX211594UBERON:0002107 liverwhole liverUBERON:0018241 prime adult stageadultmaleNANANAFelis catusNAIlluminaIllumina Genome Analyzer IIxFULL_LENGTH51paired1817818813896245001738219283.5Browse results
SRX211595UBERON:0002107 liverwhole liverUBERON:0018241 prime adult stageadultmaleNANANAFelis catusNAIlluminaIllumina Genome Analyzer IIxFULL_LENGTH51paired1865128713805177001729819227Browse results
SRX211596UBERON:0002107 liverwhole liverUBERON:0018241 prime adult stageadultmaleNANANAFelis catusNAIlluminaIllumina Genome Analyzer IIxFULL_LENGTH51paired2189336316797310001753819330Browse results
SRX211608UBERON:0002107 liverwhole liverUBERON:0018241 prime adult stageadultmaleNANANAMus musculusNAIlluminaIllumina Genome Analyzer IIxFULL_LENGTH51paired1188929110910101001875028032Browse results
SRX211609UBERON:0002107 liverwhole liverUBERON:0018241 prime adult stageadultmaleNANANAMus musculusNAIlluminaIllumina Genome Analyzer IIxFULL_LENGTH51paired1548459614193830001969828667.5Browse results
SRX211610UBERON:0002107 liverwhole liverUBERON:0018241 prime adult stageadultmaleNANANAMus musculusNAIlluminaIllumina Genome Analyzer IIxFULL_LENGTH51paired1535556313980456001985528850Browse results
SRX211611UBERON:0002107 liverwhole liverUBERON:0018241 prime adult stageadultmaleNANANAOryctolagus cuniculusNAIlluminaIllumina Genome Analyzer IIxFULL_LENGTH51paired1693784012386987001600218659.5Browse results
SRX211612UBERON:0002107 liverwhole liverUBERON:0018241 prime adult stageadultmaleNANANAOryctolagus cuniculusNAIlluminaIllumina Genome Analyzer IIxFULL_LENGTH51paired1385918610951841001552618405Browse results

Showing 1 to 20 of 74 entries