Genotype-Tissue Expression (GTEx) Common Fund Project

Experiment ID:SRP012682
Technology:RNA-Seq
Description:The aim of the Genotype-Tissue Expression (GTEx) Project is to increase our understanding of how changes in our genes affect human health and disease with the ultimate goal of improving health care for future generations. GTEx will create a database that researchers can use to study how inherited changes in genes lead to common diseases. GTEx researchers are studying genes in different tissues obtained from many different people. The GTEx project also includes a study of the GTEx donor consent process - this study will help ensure that the consent process and other aspects of the project effectively address the concerns and expectations of participants in the study. GTEx is a pioneering project that uses state-of-the-art protocols for obtaining and storing a large range of organs and tissues, and for testing them in the lab. Until now, no project has analyzed genetic variation and expression in as many tissues from the same person in... (for more see dbGaP study page.)
Source:SRP012682  GTEx - dbGAP
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Bulk RNA-Seq processed expression values in Homo sapiens

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Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
SRX641027UBERON:0001114 right lobe of liverLiver-central right lobeHsapDv:0000241 seventh decade stage (human)age: 60-69maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired4443881638391580002902836508.5Browse results
SRX641064UBERON:0009835 anterior cingulate cortexBrain-Anterior cingulate cortex (BA24)HsapDv:0000240 sixth decade stage (human)age: 50-59maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired5259596246584109003221739121.5Browse results
SRX641079UBERON:0035833 lower esophagus muscularis layerlower esophagus muscularis layerHsapDv:0000239 fifth decade stage (human)age: 40-49maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired3433868128405006003117238579.5Browse results
SRX641129UBERON:0010414 omental fat padAdipose-greater omentumHsapDv:0000241 seventh decade stage (human)age: 60-69maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired3635719731149671003033137750Browse results
SRX641162UBERON:0035833 lower esophagus muscularis layerlower esophagus muscularis layerHsapDv:0000240 sixth decade stage (human)age: 50-59femaleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired3806570734002059002924236920Browse results
SRX641186UBERON:0001873 caudate nucleuscaudate nucleusHsapDv:0000241 seventh decade stage (human)age: 60-69maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired4493145238983833003077038172.5Browse results
SRX641202UBERON:0001416 skin of abdomenSkin just above pubic hairHsapDv:0000238 fourth decade stage (human)age: 30-39maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired6359774255753287003282239449Browse results

Showing 4841 to 4847 of 4847 entries