Mus musculus strain:black6 x castaneus Transcriptome or Gene expression

Experiment ID:SRP020526

Technology:RNA-Seq

Description:RNA-Seq of reciprocally crossed Black6 x CAST hybrid mouse tissues.

Source:SRP020526 SRA

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Bulk RNA-Seq processed expression values in Mus musculus

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Showing 21 to 40 of 61 entries

Library ID Identifier of the RNA-Seq library	Anat. entity ID ID of the anatomical localization of the sample	Anat. entity name Name of the anatomical localization of the sample	Anat. entity author annotation Free text annotation of anatomical localization of the sample as provided by authors	Stage ID ID of the developmental and life stage of the sample	Stage name Name of the developmental and life stage of the sample	Stage author annotation Free text annotation of the developmental and life stage of the sample as provided by authors	Sex Annotation of the sex of the sample	Strain Annotation of the strain of the sample	Time Free text annotation of the time of sampling as provided by authors	Time unit Unit for the time of sampling as provided by authors	Species	Physiological status Physiological status of the organism at time of sampling	Technology	Sequencing platform	Sequenced transcript part Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.	Fragmentation Size of the RNA fragmentation	Run sequencing type Paired-end or single-read run	Total read count Total number of reads for the library.	Mapped read count Number of reads that could be mapped to the transcriptome.	Distinct rank count When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.	Max rank When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.	Link to processed expression values See the processed expression value results for this assay
SRX262965	UBERON:0001954	Ammon's horn	Hippocampus	UBERON:0000066	fully formed stage	aged 35-45d	male	C57BL/6J Mother x CAST/EiJ Father	NA	NA	Mus musculus	NA	Illumina	Illumina HiSeq 2000	FULL_LENGTH	90	paired	45103456	25759879	25667	32990	Browse results
SRX262966	UBERON:0000082	adult mammalian kidney	Kidney	UBERON:0000066	fully formed stage	aged 35-45d	male	C57BL/6J Mother x CAST/EiJ Father	NA	NA	Mus musculus	NA	Illumina	Illumina HiSeq 2000	FULL_LENGTH	90	paired	53003712	32610581	24627	32076.5	Browse results
SRX262967	UBERON:0002107	liver	Liver	UBERON:0000066	fully formed stage	aged 35-45d	male	C57BL/6J Mother x CAST/EiJ Father	NA	NA	Mus musculus	NA	Illumina	Illumina HiSeq 2000	FULL_LENGTH	90	paired	85819906	60709747	23696	31302	Browse results
SRX262968	UBERON:0002106	spleen	Spleen	UBERON:0000066	fully formed stage	aged 35-45d	male	CAST/EiJ Mother x C57BL/6J Father	NA	NA	Mus musculus	NA	Illumina	Illumina HiSeq 2000	FULL_LENGTH	90	paired	43951736	15411650	25398	31977.5	Browse results
SRX262969	UBERON:0002106	spleen	Spleen	UBERON:0000066	fully formed stage	aged 35-45d	male	C57BL/6J Mother x CAST/EiJ Father	NA	NA	Mus musculus	NA	Illumina	Illumina HiSeq 2000	FULL_LENGTH	90	paired	44606475	12980507	24069	31054	Browse results
SRX262970	UBERON:0000955	brain	whole brain	UBERON:0000066	fully formed stage	aged 35-45d	male	CAST/EiJ Mother x C57BL/6J Father	NA	NA	Mus musculus	NA	Illumina	Illumina HiSeq 2000	FULL_LENGTH	90	paired	46983241	25675039	25538	32983.5	Browse results
SRX262971	UBERON:0000955	brain	whole brain	UBERON:0000066	fully formed stage	aged 35-45d	male	C57BL/6J Mother x CAST/EiJ Father	NA	NA	Mus musculus	NA	Illumina	Illumina HiSeq 2000	FULL_LENGTH	90	paired	48019960	22654917	25401	32854	Browse results
SRX262972	UBERON:0002107	liver	Liver	UBERON:0000066	fully formed stage	aged 35-45d	male	CAST/EiJ Mother x C57BL/6J Father	NA	NA	Mus musculus	NA	Illumina	Illumina HiSeq 2000	FULL_LENGTH	90	paired	91626081	56712432	23694	31321	Browse results
SRX262973	UBERON:0000006	islet of Langerhans	pancreatic islets	UBERON:0000066	fully formed stage	aged 35-45d	male	C57BL/6J Mother x CAST/EiJ Father	NA	NA	Mus musculus	NA	Illumina	Illumina HiSeq 2000	FULL_LENGTH	90	paired	4299607	3727261	18590	27664.5	Browse results
SRX262974	UBERON:0000956	cerebral cortex	cortex	UBERON:0000066	fully formed stage	aged 35-45d	male	C57BL/6J Mother x CAST/EiJ Father	NA	NA	Mus musculus	NA	Illumina	Illumina HiSeq 2000	FULL_LENGTH	90	paired	14267801	12496152	22568	30829	Browse results
SRX262975	UBERON:0000006	islet of Langerhans	pancreatic islets	UBERON:0000066	fully formed stage	aged 35-45d	male	C57BL/6J Mother x CAST/EiJ Father	NA	NA	Mus musculus	NA	Illumina	Illumina HiSeq 2000	FULL_LENGTH	90	paired	5460431	4658561	20078	28927	Browse results
SRX262976	UBERON:0001898	hypothalamus	hypothalamus	UBERON:0000066	fully formed stage	aged 35-45d	male	C57BL/6J Mother x CAST/EiJ Father	NA	NA	Mus musculus	NA	Illumina	Illumina HiSeq 2000	FULL_LENGTH	90	paired	21820955	18619981	24564	32191.5	Browse results
SRX262977	UBERON:0002114	duodenum	Duodenum	UBERON:0000066	fully formed stage	aged 35-45d	male	C57BL/6J Mother x CAST/EiJ Father	NA	NA	Mus musculus	NA	Illumina	Illumina HiSeq 2000	FULL_LENGTH	90	paired	21495867	19943658	23026	30823.5	Browse results
SRX262978	UBERON:0000006	islet of Langerhans	pancreatic islets	UBERON:0000066	fully formed stage	aged 35-45d	male	C57BL/6J Mother x CAST/EiJ Father	NA	NA	Mus musculus	NA	Illumina	Illumina HiSeq 2000	FULL_LENGTH	90	paired	5733473	5046560	20196	29039.5	Browse results
SRX262979	UBERON:0000956	cerebral cortex	cortex	UBERON:0000066	fully formed stage	aged 35-45d	male	CAST/EiJ Mother x C57BL/6J Father	NA	NA	Mus musculus	NA	Illumina	Illumina HiSeq 2000	FULL_LENGTH	90	paired	29682904	24865998	24492	32252	Browse results
SRX262980	UBERON:0000006	islet of Langerhans	pancreatic islets	UBERON:0000066	fully formed stage	aged 35-45d	male	CAST/EiJ Mother x C57BL/6J Father	NA	NA	Mus musculus	NA	Illumina	Illumina HiSeq 2000	FULL_LENGTH	90	paired	24680864	21590167	23946	31631.5	Browse results
SRX262981	UBERON:0002114	duodenum	Duodenum	UBERON:0000066	fully formed stage	aged 35-45d	male	CAST/EiJ Mother x C57BL/6J Father	NA	NA	Mus musculus	NA	Illumina	Illumina HiSeq 2000	FULL_LENGTH	90	paired	12739962	11606936	21698	29889.5	Browse results
SRX262982	UBERON:0000014	zone of skin	Skin	UBERON:0000066	fully formed stage	aged 35-45d	male	CAST/EiJ Mother x C57BL/6J Father	NA	NA	Mus musculus	NA	Illumina	Illumina HiSeq 2000	FULL_LENGTH	90	paired	21978142	19760852	22491	30542.5	Browse results
SRX262983	UBERON:0001898	hypothalamus	hypothalamus	UBERON:0000066	fully formed stage	aged 35-45d	male	CAST/EiJ Mother x C57BL/6J Father	NA	NA	Mus musculus	NA	Illumina	Illumina HiSeq 2000	FULL_LENGTH	90	paired	20120551	17126039	24368	32101.5	Browse results
SRX262984	UBERON:0002264	olfactory bulb	Olfactory bulb	UBERON:0000066	fully formed stage	aged 35-45d	male	CAST/EiJ Mother x C57BL/6J Father	NA	NA	Mus musculus	NA	Illumina	Illumina HiSeq 2000	FULL_LENGTH	90	paired	24168704	20345465	24982	32372.5	Browse results

Showing 21 to 40 of 61 entries