Comparison of age-related changes in gene expression of 2 rat skeletal muscles (8 months, 18 months and 24 months)

Experiment ID:SRP070882
Technology:RNA-Seq
Description:In this study we compared Gastrocnemius and Triceps gene expression with age. Our results show that gene expression is massively modulated with age in Gastroc but on the contrary very stable in Triceps, suggesting that Triceps is resistant to age-related defects. Overall design: 3 groups of age (8 months, 18 months and 24 months) were analyzed, with 9-10 replicates per group. Gastrocnemius and Triceps were collected for each animal.
Source:SRP070882  SRA
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Bulk RNA-Seq processed expression values in Rattus norvegicus

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Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
SRX1602100UBERON:0001388 gastrocnemiusgastrocnemius muscleRnorDv:0000024 8-month-old stage (rat)Postnatal month 8maleWistarNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101paired4165684935281898001763521690.5Browse results
SRX1602101UBERON:0001509 triceps brachiitricep muscleRnorDv:0000024 8-month-old stage (rat)Postnatal month 8maleWistarNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101paired2521139321226796001636020769.5Browse results
SRX1602102UBERON:0001388 gastrocnemiusgastrocnemius muscleRnorDv:0000024 8-month-old stage (rat)Postnatal month 8maleWistarNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101paired4241899335782783001784521795.5Browse results
SRX1602103UBERON:0001509 triceps brachiitricep muscleRnorDv:0000024 8-month-old stage (rat)Postnatal month 8maleWistarNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101paired6059385351231875001779621783.5Browse results
SRX1602104UBERON:0001388 gastrocnemiusgastrocnemius muscleRnorDv:0000024 8-month-old stage (rat)Postnatal month 8maleWistarNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101paired3022639325728406001729121460.5Browse results
SRX1602105UBERON:0001509 triceps brachiitricep muscleRnorDv:0000024 8-month-old stage (rat)Postnatal month 8maleWistarNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101paired3246350527178157001723621420Browse results
SRX1602106UBERON:0001388 gastrocnemiusgastrocnemius muscleRnorDv:0000024 8-month-old stage (rat)Postnatal month 8maleWistarNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101paired4486504137587355001754621639Browse results
SRX1602107UBERON:0001509 triceps brachiitricep muscleRnorDv:0000024 8-month-old stage (rat)Postnatal month 8maleWistarNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101paired4658084739193404001756921567Browse results
SRX1602108UBERON:0001388 gastrocnemiusgastrocnemius muscleRnorDv:0000024 8-month-old stage (rat)Postnatal month 8maleWistarNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101paired4311224036742966001786621749.5Browse results
SRX1602109UBERON:0001509 triceps brachiitricep muscleRnorDv:0000024 8-month-old stage (rat)Postnatal month 8maleWistarNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101paired2684900122330096001679721109.5Browse results
SRX1602110UBERON:0001388 gastrocnemiusgastrocnemius muscleRnorDv:0000024 8-month-old stage (rat)Postnatal month 8maleWistarNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101paired6586574255181040001847422275.5Browse results
SRX1602111UBERON:0001509 triceps brachiitricep muscleRnorDv:0000024 8-month-old stage (rat)Postnatal month 8maleWistarNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101paired8189110868309753001845122261Browse results
SRX1602112UBERON:0001388 gastrocnemiusgastrocnemius muscleRnorDv:0000024 8-month-old stage (rat)Postnatal month 8maleWistarNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101paired6173701652262180001799421943Browse results
SRX1602113UBERON:0001509 triceps brachiitricep muscleRnorDv:0000024 8-month-old stage (rat)Postnatal month 8maleWistarNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101paired3094528126358782001680721098.5Browse results
SRX1602114UBERON:0001388 gastrocnemiusgastrocnemius muscleRnorDv:0000024 8-month-old stage (rat)Postnatal month 8maleWistarNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101paired4461203037033238001797921902Browse results
SRX1602115UBERON:0001509 triceps brachiitricep muscleRnorDv:0000024 8-month-old stage (rat)Postnatal month 8maleWistarNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101paired5755727748470162001795321869.5Browse results
SRX1602116UBERON:0001388 gastrocnemiusgastrocnemius muscleRnorDv:0000024 8-month-old stage (rat)Postnatal month 8maleWistarNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101paired4468724537508161001791521874.5Browse results
SRX1602117UBERON:0001509 triceps brachiitricep muscleRnorDv:0000024 8-month-old stage (rat)Postnatal month 8maleWistarNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101paired5041829042558977001774321720.5Browse results
SRX1602118UBERON:0001388 gastrocnemiusgastrocnemius muscleRnorDv:0000024 8-month-old stage (rat)Postnatal month 8maleWistarNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101paired3360293428368352001750121572.5Browse results
SRX1602119UBERON:0001509 triceps brachiitricep muscleRnorDv:0000024 8-month-old stage (rat)Postnatal month 8maleWistarNANARattus norvegicusNAIlluminaIllumina HiSeq 2500FULL_LENGTH101paired3276357227665075001737721465Browse results

Showing 1 to 20 of 58 entries