Search Genes

Gene : hmgb1a - ENSORLG00000003400 - Oryzias latipes (Japanese rice fish)

General information

Expressed in gastrula and 14 other cell types or tissues.

Gene identifier

ENSORLG00000003400

Name

hmgb1a

Description

high mobility group-T protein [Source:NCBI gene;Acc:101165167]

Organism

Oryzias latipes (Japanese rice fish)

Synonym(s)

Orthologs

89 orthologs

Paralogs

2 paralogs

Source data

Retrieve all processed expression values for that gene

Expression graph

80%

Expression table

80%

Reported absence of expression

80%

Orthologs

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Taxon Name	Species with orthologs	Gene(s)	Expression comparison
Atherinomorphae	2 species Poecilia reticulata (Guppy) Nothobranchius furzeri (Turquoise killifish)	2 genes ENSPREG00000010391 hmgb1a ENSNFUG00015013607 HMGB1A	Compare expression
Ovalentaria	4 species Poecilia reticulata (Guppy) Astatotilapia calliptera (Eastern happy) Neolamprologus brichardi (Fairy cichlid) Nothobranchius furzeri (Turquoise killifish)	4 genes ENSPREG00000010391 hmgb1a ENSACLG00000004323 hmgb1a ENSNBRG00000014226 hmgb1a ENSNFUG00015013607 HMGB1A	Compare expression
Percomorphaceae	6 species Poecilia reticulata (Guppy) Astatotilapia calliptera (Eastern happy) Neolamprologus brichardi (Fairy cichlid) Scophthalmus maximus (Turbot) Gasterosteus aculeatus (Three-spined stickleback) Nothobranchius furzeri (Turquoise killifish)	6 genes ENSPREG00000010391 hmgb1a ENSACLG00000004323 hmgb1a ENSNBRG00000014226 hmgb1a ENSSMAG00000004055 hmgb1a ENSGACG00000020545 hmgb1a ENSNFUG00015013607 HMGB1A	Compare expression
Acanthomorphata	7 species Gadus morhua (Atlantic cod) Poecilia reticulata (Guppy) Astatotilapia calliptera (Eastern happy) Neolamprologus brichardi (Fairy cichlid) Scophthalmus maximus (Turbot) Gasterosteus aculeatus (Three-spined stickleback) Nothobranchius furzeri (Turquoise killifish)	7 genes ENSGMOG00000010657 hmgb1b ENSPREG00000010391 hmgb1a ENSACLG00000004323 hmgb1a ENSNBRG00000014226 hmgb1a ENSSMAG00000004055 hmgb1a ENSGACG00000020545 hmgb1a ENSNFUG00015013607 HMGB1A	Compare expression
Euteleosteomorpha	9 species Esox lucius (Northern pike) Salmo salar (Atlantic salmon) Gadus morhua (Atlantic cod) Poecilia reticulata (Guppy) Astatotilapia calliptera (Eastern happy) Neolamprologus brichardi (Fairy cichlid) Scophthalmus maximus (Turbot) Gasterosteus aculeatus (Three-spined stickleback) Nothobranchius furzeri (Turquoise killifish)	9 genes ENSELUG00000034296 hmgb1a ENSSSAG00000000847 hmgb1 ENSGMOG00000010657 hmgb1b ENSPREG00000010391 hmgb1a ENSACLG00000004323 hmgb1a ENSNBRG00000014226 hmgb1a ENSSMAG00000004055 hmgb1a ENSGACG00000020545 hmgb1a ENSNFUG00015013607 HMGB1A	Compare expression
Clupeocephala	10 species Danio rerio (zebrafish) Esox lucius (Northern pike) Salmo salar (Atlantic salmon) Gadus morhua (Atlantic cod) Poecilia reticulata (Guppy) Astatotilapia calliptera (Eastern happy) Neolamprologus brichardi (Fairy cichlid) Scophthalmus maximus (Turbot) Gasterosteus aculeatus (Three-spined stickleback) Nothobranchius furzeri (Turquoise killifish)	11 genes ENSDARG00000099175 hmgb1a ENSDARG00000114353 hmgb1a ENSELUG00000034296 hmgb1a ENSSSAG00000000847 hmgb1 ENSGMOG00000010657 hmgb1b ENSPREG00000010391 hmgb1a ENSACLG00000004323 hmgb1a ENSNBRG00000014226 hmgb1a ENSSMAG00000004055 hmgb1a ENSGACG00000020545 hmgb1a ENSNFUG00015013607 HMGB1A	Compare expression
Neopterygii	11 species Danio rerio (zebrafish) Lepisosteus oculatus (Spotted gar) Esox lucius (Northern pike) Salmo salar (Atlantic salmon) Gadus morhua (Atlantic cod) Poecilia reticulata (Guppy) Astatotilapia calliptera (Eastern happy) Neolamprologus brichardi (Fairy cichlid) Scophthalmus maximus (Turbot) Gasterosteus aculeatus (Three-spined stickleback) Nothobranchius furzeri (Turquoise killifish)	12 genes ENSDARG00000099175 hmgb1a ENSDARG00000114353 hmgb1a ENSLOCG00000000187 hmgb1b ENSELUG00000034296 hmgb1a ENSSSAG00000000847 hmgb1 ENSGMOG00000010657 hmgb1b ENSPREG00000010391 hmgb1a ENSACLG00000004323 hmgb1a ENSNBRG00000014226 hmgb1a ENSSMAG00000004055 hmgb1a ENSGACG00000020545 hmgb1a ENSNFUG00015013607 HMGB1A	Compare expression
Euteleostomi	43 species Homo sapiens (human) Mus musculus (mouse) Danio rerio (zebrafish) Canis lupus familiaris (dog) Felis catus (cat) Equus caballus (horse) Sus scrofa (pig) Bos taurus (cattle) Capra hircus (Goat) Ovis aries (Sheep) Oryctolagus cuniculus (rabbit) Cavia porcellus (guinea pig) Gallus gallus (chicken) Meleagris gallopavo (Wild turkey) Ornithorhynchus anatinus (platypus) Callithrix jacchus (White-tufted-ear marmoset) Cercocebus atys (Sooty mangabey) Macaca fascicularis (Crab-eating macaque) Macaca mulatta (macaque) Macaca nemestrina (Pig-tailed macaque) Papio anubis (Olive baboon) Gorilla gorilla (gorilla) Pan paniscus (bonobo) Pan troglodytes (chimpanzee) Microcebus murinus (Gray mouse lemur) Chlorocebus sabaeus (Green monkey) Manis javanica (Malayan pangolin) Rattus norvegicus (rat) Monodelphis domestica (opossum) Xenopus laevis (African clawed frog) Xenopus tropicalis (western clawed frog) Anolis carolinensis (green anole) Lepisosteus oculatus (Spotted gar) Esox lucius (Northern pike) Salmo salar (Atlantic salmon) Gadus morhua (Atlantic cod) Poecilia reticulata (Guppy) Astatotilapia calliptera (Eastern happy) Neolamprologus brichardi (Fairy cichlid) Scophthalmus maximus (Turbot) Gasterosteus aculeatus (Three-spined stickleback) Nothobranchius furzeri (Turquoise killifish) Latimeria chalumnae (Coelacanth)	87 genes ENSG00000189403 HMGB1 ENSMUSG00000066551 Hmgb1 ENSDARG00000099175 hmgb1a ENSDARG00000114353 hmgb1a ENSCAFG00000006597 HMGB1 ENSFCAG00000000200 HMGB1 ENSFCAG00000014767 ENSECAG00000003655 ENSECAG00000005186 ENSECAG00000008439 HMGB1 ENSSSCG00000009327 HMGB1 ENSBTAG00000014862 ENSBTAG00000018103 HMGB1 ENSCHIG00000014987 ENSCHIG00000018473 HMGB1 ENSOARG00000005357 ENSOARG00000011611 ENSOARG00000011916 ENSOARG00000017078 LOC101111388 ENSOCUG00000004133 ENSOCUG00000021335 HMGB1 ENSOCUG00000022728 ENSOCUG00000024061 HMGB1 ENSCPOG00000000167 ENSCPOG00000007538 ENSCPOG00000031835 HMGB1 ENSGALG00000042875 HMGB1 ENSMGAG00000015087 HMGB1 ENSOANG00000014719 HMGB1 ENSCJAG00000020439 HMGB1 ENSCJAG00000043117 ENSCATG00000003423 ENSCATG00000017216 HMGB1 ENSCATG00000024661 ENSCATG00000042173 ENSMFAG00000000311 ENSMFAG00000001923 ENSMFAG00000030905 HMGB1 ENSMFAG00000040049 ENSMMUG00000019832 ENSMMUG00000046615 HMGB1 ENSMNEG00000028891 HMGB1 ENSMNEG00000029589 ENSMNEG00000030183 ENSPANG00000007200 HMGB1 ENSPANG00000011105 ENSGGOG00000007804 ENSGGOG00000026764 HMGB1 ENSGGOG00000042317 ENSPPAG00000012676 ENSPPAG00000021871 ENSPPAG00000028336 ENSPPAG00000030148 HMGB1 ENSPPAG00000039433 ENSPTRG00000044893 LOC107970066 ENSPTRG00000047359 ENSPTRG00000048008 HMGB1 ENSPTRG00000048984 ENSPTRG00000050599 ENSMICG00000006213 ENSMICG00000007144 HMGB1 ENSCSAG00000018600 108386102 HMGB1 ENSRNOG00000029813 AABR07035218.1 ENSRNOG00000030351 AABR07006627.1 ENSRNOG00000032420 AC108595.1 ENSRNOG00000038478 AABR07029613.1 ENSRNOG00000051482 Hmg1l1 ENSRNOG00000058908 Hmgb1 ENSMODG00000004443 ENSMODG00000009238 HMGB1 108700261 LOC108700261 108709952 HMG-1 380530 hmgb1.L ENSXETG00000019166 hmgb1 ENSACAG00000005092 HMGB1 ENSLOCG00000000187 hmgb1b ENSELUG00000034296 hmgb1a ENSSSAG00000000847 hmgb1 ENSGMOG00000010657 hmgb1b ENSPREG00000010391 hmgb1a ENSACLG00000004323 hmgb1a ENSNBRG00000014226 hmgb1a ENSSMAG00000004055 hmgb1a ENSGACG00000020545 hmgb1a ENSNFUG00015013607 HMGB1A ENSLACG00000006701 HMGB1	Compare expression
Chordata	44 species Homo sapiens (human) Mus musculus (mouse) Danio rerio (zebrafish) Canis lupus familiaris (dog) Felis catus (cat) Equus caballus (horse) Sus scrofa (pig) Bos taurus (cattle) Capra hircus (Goat) Ovis aries (Sheep) Oryctolagus cuniculus (rabbit) Cavia porcellus (guinea pig) Gallus gallus (chicken) Meleagris gallopavo (Wild turkey) Ornithorhynchus anatinus (platypus) Callithrix jacchus (White-tufted-ear marmoset) Cercocebus atys (Sooty mangabey) Macaca fascicularis (Crab-eating macaque) Macaca mulatta (macaque) Macaca nemestrina (Pig-tailed macaque) Papio anubis (Olive baboon) Gorilla gorilla (gorilla) Pan paniscus (bonobo) Pan troglodytes (chimpanzee) Microcebus murinus (Gray mouse lemur) Chlorocebus sabaeus (Green monkey) Manis javanica (Malayan pangolin) Rattus norvegicus (rat) Monodelphis domestica (opossum) Xenopus laevis (African clawed frog) Xenopus tropicalis (western clawed frog) Anolis carolinensis (green anole) Lepisosteus oculatus (Spotted gar) Esox lucius (Northern pike) Salmo salar (Atlantic salmon) Gadus morhua (Atlantic cod) Poecilia reticulata (Guppy) Astatotilapia calliptera (Eastern happy) Neolamprologus brichardi (Fairy cichlid) Scophthalmus maximus (Turbot) Gasterosteus aculeatus (Three-spined stickleback) Nothobranchius furzeri (Turquoise killifish) Branchiostoma lanceolatum (Common lancelet) Latimeria chalumnae (Coelacanth)	88 genes ENSG00000189403 HMGB1 ENSMUSG00000066551 Hmgb1 ENSDARG00000099175 hmgb1a ENSDARG00000114353 hmgb1a ENSCAFG00000006597 HMGB1 ENSFCAG00000000200 HMGB1 ENSFCAG00000014767 ENSECAG00000003655 ENSECAG00000005186 ENSECAG00000008439 HMGB1 ENSSSCG00000009327 HMGB1 ENSBTAG00000014862 ENSBTAG00000018103 HMGB1 ENSCHIG00000014987 ENSCHIG00000018473 HMGB1 ENSOARG00000005357 ENSOARG00000011611 ENSOARG00000011916 ENSOARG00000017078 LOC101111388 ENSOCUG00000004133 ENSOCUG00000021335 HMGB1 ENSOCUG00000022728 ENSOCUG00000024061 HMGB1 ENSCPOG00000000167 ENSCPOG00000007538 ENSCPOG00000031835 HMGB1 ENSGALG00000042875 HMGB1 ENSMGAG00000015087 HMGB1 ENSOANG00000014719 HMGB1 ENSCJAG00000020439 HMGB1 ENSCJAG00000043117 ENSCATG00000003423 ENSCATG00000017216 HMGB1 ENSCATG00000024661 ENSCATG00000042173 ENSMFAG00000000311 ENSMFAG00000001923 ENSMFAG00000030905 HMGB1 ENSMFAG00000040049 ENSMMUG00000019832 ENSMMUG00000046615 HMGB1 ENSMNEG00000028891 HMGB1 ENSMNEG00000029589 ENSMNEG00000030183 ENSPANG00000007200 HMGB1 ENSPANG00000011105 ENSGGOG00000007804 ENSGGOG00000026764 HMGB1 ENSGGOG00000042317 ENSPPAG00000012676 ENSPPAG00000021871 ENSPPAG00000028336 ENSPPAG00000030148 HMGB1 ENSPPAG00000039433 ENSPTRG00000044893 LOC107970066 ENSPTRG00000047359 ENSPTRG00000048008 HMGB1 ENSPTRG00000048984 ENSPTRG00000050599 ENSMICG00000006213 ENSMICG00000007144 HMGB1 ENSCSAG00000018600 108386102 HMGB1 ENSRNOG00000029813 AABR07035218.1 ENSRNOG00000030351 AABR07006627.1 ENSRNOG00000032420 AC108595.1 ENSRNOG00000038478 AABR07029613.1 ENSRNOG00000051482 Hmg1l1 ENSRNOG00000058908 Hmgb1 ENSMODG00000004443 ENSMODG00000009238 HMGB1 108700261 LOC108700261 108709952 HMG-1 380530 hmgb1.L ENSXETG00000019166 hmgb1 ENSACAG00000005092 HMGB1 ENSLOCG00000000187 hmgb1b ENSELUG00000034296 hmgb1a ENSSSAG00000000847 hmgb1 ENSGMOG00000010657 hmgb1b ENSPREG00000010391 hmgb1a ENSACLG00000004323 hmgb1a ENSNBRG00000014226 hmgb1a ENSSMAG00000004055 hmgb1a ENSGACG00000020545 hmgb1a ENSNFUG00015013607 HMGB1A BL11411 HMGB1 ENSLACG00000006701 HMGB1	Compare expression
Bilateria	45 species Homo sapiens (human) Mus musculus (mouse) Danio rerio (zebrafish) Caenorhabditis elegans (nematode) Canis lupus familiaris (dog) Felis catus (cat) Equus caballus (horse) Sus scrofa (pig) Bos taurus (cattle) Capra hircus (Goat) Ovis aries (Sheep) Oryctolagus cuniculus (rabbit) Cavia porcellus (guinea pig) Gallus gallus (chicken) Meleagris gallopavo (Wild turkey) Ornithorhynchus anatinus (platypus) Callithrix jacchus (White-tufted-ear marmoset) Cercocebus atys (Sooty mangabey) Macaca fascicularis (Crab-eating macaque) Macaca mulatta (macaque) Macaca nemestrina (Pig-tailed macaque) Papio anubis (Olive baboon) Gorilla gorilla (gorilla) Pan paniscus (bonobo) Pan troglodytes (chimpanzee) Microcebus murinus (Gray mouse lemur) Chlorocebus sabaeus (Green monkey) Manis javanica (Malayan pangolin) Rattus norvegicus (rat) Monodelphis domestica (opossum) Xenopus laevis (African clawed frog) Xenopus tropicalis (western clawed frog) Anolis carolinensis (green anole) Lepisosteus oculatus (Spotted gar) Esox lucius (Northern pike) Salmo salar (Atlantic salmon) Gadus morhua (Atlantic cod) Poecilia reticulata (Guppy) Astatotilapia calliptera (Eastern happy) Neolamprologus brichardi (Fairy cichlid) Scophthalmus maximus (Turbot) Gasterosteus aculeatus (Three-spined stickleback) Nothobranchius furzeri (Turquoise killifish) Branchiostoma lanceolatum (Common lancelet) Latimeria chalumnae (Coelacanth)	89 genes ENSG00000189403 HMGB1 ENSMUSG00000066551 Hmgb1 ENSDARG00000099175 hmgb1a ENSDARG00000114353 hmgb1a WBGene00001972 hmg-1.2 ENSCAFG00000006597 HMGB1 ENSFCAG00000000200 HMGB1 ENSFCAG00000014767 ENSECAG00000003655 ENSECAG00000005186 ENSECAG00000008439 HMGB1 ENSSSCG00000009327 HMGB1 ENSBTAG00000014862 ENSBTAG00000018103 HMGB1 ENSCHIG00000014987 ENSCHIG00000018473 HMGB1 ENSOARG00000005357 ENSOARG00000011611 ENSOARG00000011916 ENSOARG00000017078 LOC101111388 ENSOCUG00000004133 ENSOCUG00000021335 HMGB1 ENSOCUG00000022728 ENSOCUG00000024061 HMGB1 ENSCPOG00000000167 ENSCPOG00000007538 ENSCPOG00000031835 HMGB1 ENSGALG00000042875 HMGB1 ENSMGAG00000015087 HMGB1 ENSOANG00000014719 HMGB1 ENSCJAG00000020439 HMGB1 ENSCJAG00000043117 ENSCATG00000003423 ENSCATG00000017216 HMGB1 ENSCATG00000024661 ENSCATG00000042173 ENSMFAG00000000311 ENSMFAG00000001923 ENSMFAG00000030905 HMGB1 ENSMFAG00000040049 ENSMMUG00000019832 ENSMMUG00000046615 HMGB1 ENSMNEG00000028891 HMGB1 ENSMNEG00000029589 ENSMNEG00000030183 ENSPANG00000007200 HMGB1 ENSPANG00000011105 ENSGGOG00000007804 ENSGGOG00000026764 HMGB1 ENSGGOG00000042317 ENSPPAG00000012676 ENSPPAG00000021871 ENSPPAG00000028336 ENSPPAG00000030148 HMGB1 ENSPPAG00000039433 ENSPTRG00000044893 LOC107970066 ENSPTRG00000047359 ENSPTRG00000048008 HMGB1 ENSPTRG00000048984 ENSPTRG00000050599 ENSMICG00000006213 ENSMICG00000007144 HMGB1 ENSCSAG00000018600 108386102 HMGB1 ENSRNOG00000029813 AABR07035218.1 ENSRNOG00000030351 AABR07006627.1 ENSRNOG00000032420 AC108595.1 ENSRNOG00000038478 AABR07029613.1 ENSRNOG00000051482 Hmg1l1 ENSRNOG00000058908 Hmgb1 ENSMODG00000004443 ENSMODG00000009238 HMGB1 108700261 LOC108700261 108709952 HMG-1 380530 hmgb1.L ENSXETG00000019166 hmgb1 ENSACAG00000005092 HMGB1 ENSLOCG00000000187 hmgb1b ENSELUG00000034296 hmgb1a ENSSSAG00000000847 hmgb1 ENSGMOG00000010657 hmgb1b ENSPREG00000010391 hmgb1a ENSACLG00000004323 hmgb1a ENSNBRG00000014226 hmgb1a ENSSMAG00000004055 hmgb1a ENSGACG00000020545 hmgb1a ENSNFUG00015013607 HMGB1A BL11411 HMGB1 ENSLACG00000006701 HMGB1	Compare expression

Showing 1 to 10 of 10 entries

Orthology information comes from OMA : ENSORLG00000003400.

Paralogs (same species)

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Taxon Name	Gene(s)	Expression comparison	See details
Teleostei	1 gene ENSORLG00000003951 hmgb1b	Compare expression: table \| graph
Vertebrata	2 genes ENSORLG00000003951 hmgb1b ENSORLG00000018492 hmgb2a	Compare expression: table \| graph

Showing 1 to 2 of 2 entries

Paralogy information comes from OMA : ENSORLG00000003400.

Cross-references

Ensembl

ENSORLG00000003400 (hmgb1a)

ZFIN

ZDB-GENE-030131-341 (hmgb1a)

UniProtKB/TrEMBL

H2LE57,H2LE57_ORYLA