Genotype-Tissue Expression (GTEx) Common Fund Project

Experiment ID:SRP012682
Technology:RNA-Seq
Description:The aim of the Genotype-Tissue Expression (GTEx) Project is to increase our understanding of how changes in our genes affect human health and disease with the ultimate goal of improving health care for future generations. GTEx will create a database that researchers can use to study how inherited changes in genes lead to common diseases. GTEx researchers are studying genes in different tissues obtained from many different people. The GTEx project also includes a study of the GTEx donor consent process - this study will help ensure that the consent process and other aspects of the project effectively address the concerns and expectations of participants in the study. GTEx is a pioneering project that uses state-of-the-art protocols for obtaining and storing a large range of organs and tissues, and for testing them in the lab. Until now, no project has analyzed genetic variation and expression in as many tissues from the same person in... (for more see dbGaP study page.)
Source:SRP012682  GTEx - dbGAP
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Bulk RNA-Seq processed expression values in Homo sapiens

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Showing 41 to 60 of 4847 entries

Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
SRX198968UBERON:0001882 nucleus accumbensnucleus accumbensHsapDv:0000241 seventh decade stage (human)age: 60-69femaleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired5187618042447193003257839228.5Browse results
SRX198971UBERON:0001874 putamenputamenHsapDv:0000241 seventh decade stage (human)age: 60-69maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired7691648444982036003078637725Browse results
SRX198976UBERON:0009834 dorsolateral prefrontal cortexBrain-Frontal Cortex (BA9)HsapDv:0000241 seventh decade stage (human)age: 60-69femaleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired4470482537582955003203738853Browse results
SRX198992UBERON:0001876 amygdalaamygdalaHsapDv:0000239 fifth decade stage (human)age: 40-49femaleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired5725045046394916003246239113Browse results
SRX198997UBERON:0001882 nucleus accumbensnucleus accumbensHsapDv:0000241 seventh decade stage (human)age: 60-69maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired5514164647381404003276239219Browse results
SRX199011UBERON:0009835 anterior cingulate cortexBrain-Anterior cingulate cortex (BA24)HsapDv:0000241 seventh decade stage (human)age: 60-69maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired5954892049515941003189038552Browse results
SRX199016UBERON:0001388 gastrocnemiusGastrocnemius below patellaHsapDv:0000237 third decade stage (human)age: 20-29maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired6317001651772515002890136119.5Browse results
SRX199019UBERON:0000178 bloodBlood-whole bloodHsapDv:0000241 seventh decade stage (human)age: 60-69femaleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired14340233453418443003044337333.5Browse results
SRX199028UBERON:0001954 Ammon's hornhippocampusHsapDv:0000239 fifth decade stage (human)age: 40-49maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired10453284027603775003147438153Browse results
SRX199036UBERON:0001388 gastrocnemiusGastrocnemius below patellaHsapDv:0000239 fifth decade stage (human)age: 40-49maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired5679017030775338002678134459Browse results
SRX199042UBERON:0002245 cerebellar hemisphereBrain-cerebellar hemisphereHsapDv:0000241 seventh decade stage (human)age: 60-69femaleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired4341451433973130003158838554.5Browse results
SRX199044UBERON:0008952 upper lobe of left lungLung - Inferior segment of left upper lobeHsapDv:0000241 seventh decade stage (human)age: 60-69femaleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired2806557618954470003143938737.5Browse results
SRX199051UBERON:0001511 skin of legskin of legHsapDv:0000238 fourth decade stage (human)age: 30-39maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired9717594043207293003370639758.5Browse results
SRX199055UBERON:0002084 heart left ventricleHeart-anterior left VentricleHsapDv:0000238 fourth decade stage (human)age: 30-39maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired10474040334696708003135337946.5Browse results
SRX199060UBERON:0002084 heart left ventricleHeart-anterior left VentricleHsapDv:0000240 sixth decade stage (human)age: 50-59maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired4896808842770163002931936778.5Browse results
SRX199063UBERON:0002245 cerebellar hemisphereBrain-cerebellar hemisphereHsapDv:0000239 fifth decade stage (human)age: 40-49femaleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired5164854829083306003115937892Browse results
SRX199066UBERON:0000178 bloodBlood-whole bloodHsapDv:0000241 seventh decade stage (human)age: 60-69maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired4513670433922741002716534875.5Browse results
SRX199071UBERON:0001874 putamenputamenHsapDv:0000241 seventh decade stage (human)age: 60-69femaleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired5424623439171204003259539188Browse results
SRX199080UBERON:0002245 cerebellar hemisphereBrain-cerebellar hemisphereHsapDv:0000241 seventh decade stage (human)age: 60-69femaleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired5584431643252192003090337595.5Browse results
SRX199084UBERON:0000178 bloodBlood-whole bloodHsapDv:0000241 seventh decade stage (human)age: 60-69maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina MiSeqFULL_LENGTH101paired3976936130437350002620634434.5Browse results

Showing 41 to 60 of 4847 entries