Genotype-Tissue Expression (GTEx) Common Fund Project

Experiment ID:SRP012682
Technology:RNA-Seq
Description:The aim of the Genotype-Tissue Expression (GTEx) Project is to increase our understanding of how changes in our genes affect human health and disease with the ultimate goal of improving health care for future generations. GTEx will create a database that researchers can use to study how inherited changes in genes lead to common diseases. GTEx researchers are studying genes in different tissues obtained from many different people. The GTEx project also includes a study of the GTEx donor consent process - this study will help ensure that the consent process and other aspects of the project effectively address the concerns and expectations of participants in the study. GTEx is a pioneering project that uses state-of-the-art protocols for obtaining and storing a large range of organs and tissues, and for testing them in the lab. Until now, no project has analyzed genetic variation and expression in as many tissues from the same person in... (for more see dbGaP study page.)
Source:SRP012682  GTEx - dbGAP
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Bulk RNA-Seq processed expression values in Homo sapiens

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Showing 61 to 80 of 4847 entries

Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
SRX199093UBERON:0000178 bloodBlood-whole bloodHsapDv:0000237 third decade stage (human)age: 20-29femaleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired8317588340882522002646134754Browse results
SRX199102UBERON:0001511 skin of legskin of legHsapDv:0000239 fifth decade stage (human)age: 40-49femaleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired18676990132718348003384839673.5Browse results
SRX199104UBERON:0002245 cerebellar hemisphereBrain-cerebellar hemisphereHsapDv:0000241 seventh decade stage (human)age: 60-69femaleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired5504056241134020003217338791Browse results
SRX199108UBERON:0002046 thyroid glandThyroid-non-nodular regionHsapDv:0000237 third decade stage (human)age: 20-29femaleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired4813811630458182003136338377Browse results
SRX199118UBERON:0001120 left lobe of thyroid glandThyroid-non-nodular region - leftHsapDv:0000239 fifth decade stage (human)age: 40-49femaleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired4479487225480790003140138335.5Browse results
SRX199127UBERON:0001882 nucleus accumbensnucleus accumbensHsapDv:0000241 seventh decade stage (human)age: 60-69femaleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired6297406745147102003452440528.5Browse results
SRX199131UBERON:0001874 putamenputamenHsapDv:0000239 fifth decade stage (human)age: 40-49femaleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired5990316345254640003255339058.5Browse results
SRX199145UBERON:0002098 apex of heartHeart-Left Ventricle-ApexHsapDv:0000240 sixth decade stage (human)age: 50-59maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired5260768443156912002989637162.5Browse results
SRX199146UBERON:0001388 gastrocnemiusGastrocnemius below patellaHsapDv:0000240 sixth decade stage (human)age: 50-59maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired6390419448937857002877936071.5Browse results
SRX199149UBERON:0009835 anterior cingulate cortexBrain-Anterior cingulate cortex (BA24)HsapDv:0000238 fourth decade stage (human)age: 30-39maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired4719041539974019003175038519.5Browse results
SRX199154UBERON:0000178 bloodBlood-whole bloodHsapDv:0000239 fifth decade stage (human)age: 40-49maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired4898423441267708002566233778Browse results
SRX199155UBERON:0002084 heart left ventricleHeart-anterior left VentricleHsapDv:0000239 fifth decade stage (human)age: 40-49maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired4864256641855770002913336581.5Browse results
SRX199168UBERON:0001898 hypothalamushypothalamusHsapDv:0000241 seventh decade stage (human)age: 60-69femaleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired18195197420638854003135237956.5Browse results
SRX199175UBERON:0001954 Ammon's hornhippocampusHsapDv:0000239 fifth decade stage (human)age: 40-49femaleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired5593223446519315003271639311.5Browse results
SRX199179UBERON:0002245 cerebellar hemisphereBrain-cerebellar hemisphereHsapDv:0000241 seventh decade stage (human)age: 60-69maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired3168472920330393003001137383.5Browse results
SRX199181UBERON:0000178 bloodBlood-whole bloodHsapDv:0000238 fourth decade stage (human)age: 30-39maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired6344463952578773002882236729.5Browse results
SRX199187UBERON:0000178 bloodBlood-whole bloodHsapDv:0000237 third decade stage (human)age: 20-29maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired6069736344691080002749435503.5Browse results
SRX199220UBERON:0009834 dorsolateral prefrontal cortexBrain-Frontal Cortex (BA9)HsapDv:0000241 seventh decade stage (human)age: 60-69maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired5093845544315909003126238110Browse results
SRX199254UBERON:0009834 dorsolateral prefrontal cortexBrain-Frontal Cortex (BA9)HsapDv:0000238 fourth decade stage (human)age: 30-39maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired5343625542588027003216238961.5Browse results
SRX199265UBERON:0002046 thyroid glandThyroid-non-nodular regionHsapDv:0000241 seventh decade stage (human)age: 60-69maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired8082006744717494003413540241.5Browse results

Showing 61 to 80 of 4847 entries